Re: Using Owlready2 for biological ontologies

Posted by Jiba on
URL: http://owlready.306.s1.nabble.com/Using-Owlready2-for-biological-ontologies-tp3296p3297.html

Hello,

After running the reasoner, I get two additional ancestors:

>>> sync_reasoner()
>>> print(target_class.ancestors())
{obo.UBERON_0000061, obo.CL_0000163, owl.Thing, obo.CL_0000000}

Is that the result you expect?

I have no particular problem for running the reasoner ; I am using the following version of Java under Linux:

jiba dans src :  java -version
openjdk version "1.8.0_392"
OpenJDK Runtime Environment (build 1.8.0_392-b08)
OpenJDK 64-Bit Server VM (build 25.392-b08, mixed mode)

Which version are you using? Do you have also other ontologies loaded at the same time that may increase the volume of data for the reasoner?

Jiba