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Hi Jiba,
I'm facing the same problem.
I'm using windows with anaconda.
I tried to update the sqlite and sqlite3 from anaconda, but do not work.
my version is like follow:
print(__import__("sqlite3").version)
2.6.0
print (__import__("sqlite3").sqlite_version)
3.31.1
print(sys.version)
3.7.6 (default, Jan 8 2020, 20:23:39) [MSC v.1916 64 bit (AMD64)]
Importing UMLS from Zip file umls-2019AB-metathesaurus.zip with Python version 3.7...
Parsing 2019AB/META/MRRANK.RRF as MRRANK
Parsing 2019AB/META/MRCONSO.RRF as MRCONSO
Parsing 2019AB/META/MRDEF.RRF as MRDEF
Parsing 2019AB/META/MRREL.RRF as MRREL
Parsing 2019AB/META/MRSAT.RRF as MRSAT
Breaking ORIG cycles...
SNOMEDCT_US : 0 cycles found:
ICD10 : 0 cycles found:
SRC : 0 cycles found:
Finalizing only properties and restrictions...
Finalizing CUI - ORIG mapping...
FTS Indexing...
---------------------------------------------------------------------------
OperationalError Traceback (most recent call last)
<ipython-input-7-a1e6606c43bd> in <module>
----> 1 import_umls("umls-2019AB-metathesaurus.zip", terminologies = ["ICD10", "SNOMEDCT_US", "CUI"])
D:\anaconda3\lib\site-packages\owlready2\pymedtermino2\umls.py in import_umls(umls_zip_filename, terminologies, langs, fts_index, extract_groups, extract_attributes, extract_relations, extract_definitions, remove_suppressed)
747 if fts_index:
748 print("FTS Indexing...")
--> 749 default_world.full_text_search_properties.append(label)
750 default_world.full_text_search_properties.append(PYM.synonyms)
751
D:\anaconda3\lib\site-packages\owlready2\util.py in append(self, x)
75 def _replace(self, old, new): super().__setitem__(self.index(old), new)
76 def reinit(self, l): old = list(self); super().__init__(l) ; self._callback(self._obj, old)
---> 77 def append(self, x): old = list(self); super().append(x) ; self._callback(self._obj, old)
78 def insert(self, i, x): old = list(self); super().insert(i, x) ; self._callback(self._obj, old)
79 def extend(self, l): old = list(self); super().extend(l) ; self._callback(self._obj, old)
D:\anaconda3\lib\site-packages\owlready2\namespace.py in _full_text_search_changed(self, old)
474 self.graph.disable_full_text_search(Prop.storid)
475 for Prop in new - old:
--> 476 self.graph.enable_full_text_search(Prop.storid)
477
478 def new_blank_node(self): return self.graph.new_blank_node()
D:\anaconda3\lib\site-packages\owlready2\triplelite.py in enable_full_text_search(self, prop_storid)
1001 self.execute("""INSERT INTO prop_fts VALUES (?)""", (prop_storid,));
1002
-> 1003 self.execute("""CREATE VIRTUAL TABLE fts_%s USING fts5(s UNINDEXED, o, d UNINDEXED, content=datas, content_rowid=rowid)""" % prop_storid)
1004 self.execute("""INSERT INTO fts_%s(rowid, s, o, d) SELECT rowid, s, o, d FROM datas WHERE p=%s""" % (prop_storid, prop_storid))
1005
OperationalError: no such module: fts5
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