can't mix python and owl

[ZhangYu]

Dear Mr Jean-Baptiste Lamy,

I try to implement example#1:reasoning in your paper,<Ontology-oriented programming in Python with automatic classification and high level constructs for biomedical ontologies>.

I got the following error:
             AttributeError: 'take' property is not defined.
I don't know how to implement this sentence in your paper,"Annotation triple :(drug.owl,python_module,drug.py)"

can you give me some help?

Thanks in advance for your attention!

Best Regards,
GB

[Jiba]

Hello,

You need the annotation. It indicates to Owlready that the Python module should be loaded with the ontology.

To add the annotation, you need to:

 1) import the Owlready ontology (URI http://www.lesfleursdunormal.fr/static/_downloads/owlready_ontology.owl )

 2) Add the annotation


Both steps can be performed in Protege, in the "Active ontology" tab. See example in the doc here:

        http://owlready2.readthedocs.io/en/latest/mixing_python_owl.html

Best regards,
Jean-Baptiste Lamy
MCF, LIMICS, Université Paris 13

> Dear Mr Jean-Baptiste Lamy,
>
> I try to implement example#1:reasoning in your paper,<Ontology-oriented
> programming in Python with automatic classification and high level
> constructs for biomedical ontologies>.
>
> I got the following error:
>              AttributeError: 'take' property is not defined.
> I don't know how to implement this sentence in your paper,"Annotation triple
> :(drug.owl,python_module,drug.py)"
>
> can you give me some help?
>
> Thanks in advance for your attention!
>
> Best Regards,
> GB
>
>
>
> _______________________________________________
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> To unsubscribe from Owlready, visit

[rdk]

Hi Jean-Baptiste,

I think it would be helpful to provide the URI of 'owlready_ontology.owl' in the documentation, as you did here.
Regarding the methods embedded in classes, when mixing Python with OWL: does it also work for '__ini__()'?

Best regards,

Rui de Klerk

[Jiba]

Hi,

> I think it would be helpful to provide the URI of 'owlready_ontology.owl' in
> the documentation, as you did here.

You are right, I'm adding it in the doc!

> Regarding the methods embedded in classes, when mixing Python with OWL: does
> it also work for '__ini__()'?

Yes, it also work for __init__() (however, do not forget to call the super implementation!).

Best regards,
Jean-Baptiste Lamy
MCF, LIMICS, Université Paris 13

> Hi Jean-Baptiste,
>
> I think it would be helpful to provide the URI of 'owlready_ontology.owl' in
> the documentation, as you did here.
> Regarding the methods embedded in classes, when mixing Python with OWL: does
> it also work for '__ini__()'?
>
> Best regards,
>
> Rui de Klerk
>
>
>
> _______________________________________________
> If you reply to this email, your message will be added to the discussion below:
> http://owlready.8326.n8.nabble.com/can-t-mix-python-and-owl-tp68p188.html
> To start a new topic under Owlready, email [hidden email]
> To unsubscribe from Owlready, visit