What is username,password and host in connect to umls in pymedtermino2?

[Moslem]

What is host , user and password  in connect to umls in the pymedtermino2 to below instruction?

" connect_to_umls_db(host, user, password, database_name = "umls", encoding = "latin1") "

[Jiba]

Hi,

connect_to_umls_db() is in PyMedTermino 1. PyMedTermino 1 requires to setup a UMLS database server, and username and password are the identifiers to connect to this database.

On the contrary, PyMedTermino 2/ Owlready do not use an external server, it directly import UMLS data. You don't need connect_to_umls_db(), username or password.

Jiba

[Moslem]

hi
Thank you for your reply
I use the pymedtermino1 version and I do not know exactly what to use instead of my username, password and host. This is while I am registered on the UMLS site.
Can you guide me what to use for my username, password and host?
  Thank you for your help

[Jiba]

Hi,

In PyMedTermino 1, host is the address of the computer that hosts the UMLS MySQL database server (e.g. localhost if you installed it locally). username and password are the login/password for connecting to MySQL. It depends on how you installed that server (see the populate_mysql scripts in UMLS).

Jiba

[Moslem]

I can not find " populate_mysql " file.

 Where do I find this file?

I recently started working with UMLS

On Fri, May 24, 2019 at 3:44 PM Jiba [via Owlready] <[hidden email]> wrote:

Hi,

In PyMedTermino 1, host is the address of the computer that hosts the UMLS MySQL database server (e.g. localhost if you installed it locally). username and password are the login/password for connecting to MySQL. It depends on how you installed that server (see the populate_mysql scripts in UMLS).

Jiba

---

If you reply to this email, your message will be added to the discussion below:

http://owlready.8326.n8.nabble.com/What-is-username-password-and-host-in-connect-to-umls-in-pymedtermino2-tp1072p1091.html

To unsubscribe from What is username,password and host in connect to umls in pymedtermino2?, click here.
NAML

[Jiba]

You can find it in UMLS archive, in the /2018AB-full/mmsys.zip subarchive and then in the
 /config/2018AB/DB_ORF/Mysql5.6/ directory.